A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-06-18, 19:08 BST
based on data in:
/Users/rmcolq/Work/git/pathbio3/analysis/Plasmodium/star
General Statistics
| Sample Name | % Aligned | M Aligned |
|---|---|---|
| 260Sch-1_S13 | 83.2% | 48.5M |
| 260Sch-2_S14 | 89.9% | 45.4M |
| 260Sch-3_S15 | 88.6% | 43.9M |
| 820LT-1_S1 | 56.9% | 31.1M |
| 820LT-2_S2 | 39.9% | 16.2M |
| 820LT-3_S3 | 77.2% | 36.6M |
| 820Sch-1_S10 | 85.7% | 69.0M |
| 820Sch-2_S11 | 84.4% | 73.1M |
| 820Sch-3_S12 | 86.8% | 53.9M |
| G260-1_S4 | 74.6% | 29.9M |
| G260-2_S5 | 71.2% | 35.6M |
| G260-3_S6 | 73.5% | 30.2M |
| G260sch-1-23468787 | 91.1% | 60.2M |
| G260sch-2-23468788 | 71.0% | 40.8M |
| G260sch-3-23468793 | 88.8% | 56.6M |
STAR
STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.
Alignment Scores
Gene Counts
Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.