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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.22.2

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-06-18, 19:08 BST based on data in: /Users/rmcolq/Work/git/pathbio3/analysis/Plasmodium/star

        General Statistics

        Showing 15/15 rows and 2/2 columns.
        Sample Name% AlignedM Aligned
        260Sch-1_S13
        83.2%
        48.5M
        260Sch-2_S14
        89.9%
        45.4M
        260Sch-3_S15
        88.6%
        43.9M
        820LT-1_S1
        56.9%
        31.1M
        820LT-2_S2
        39.9%
        16.2M
        820LT-3_S3
        77.2%
        36.6M
        820Sch-1_S10
        85.7%
        69.0M
        820Sch-2_S11
        84.4%
        73.1M
        820Sch-3_S12
        86.8%
        53.9M
        G260-1_S4
        74.6%
        29.9M
        G260-2_S5
        71.2%
        35.6M
        G260-3_S6
        73.5%
        30.2M
        G260sch-1-23468787
        91.1%
        60.2M
        G260sch-2-23468788
        71.0%
        40.8M
        G260sch-3-23468793
        88.8%
        56.6M

        STAR

        STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.

        Alignment Scores

        Created with MultiQC

        Gene Counts

        Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.

        Created with MultiQC

        MultiQC v1.22.2 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.